#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Mon Aug 21 14:59:22 2023 @author: timofej """ import os import json import math as m import numpy as np from numpy.linalg import norm from datetime import datetime #from random import sample as choose from plot import qtplot from neuropercolation import Simulate4Layers eps_space = list(np.linspace(0.01,0.2,20)) def resultant(sample): phase_x = [m.cos(ind) for ind in sample] phase_y = [m.sin(ind) for ind in sample] return (np.average(phase_x), np.average(phase_y)) def new_folder(path): if not os.path.exists(path): os.makedirs(path) phase = np.vectorize(lambda x,y: (m.atan2(y,x)+m.pi)%(2*m.pi)-m.pi) diff = np.vectorize(lambda x,y: (y-x+m.pi)%(2*m.pi)-m.pi) H2 = lambda x: -x*m.log2(x)-(1-x)*m.log2(1-x) extremes = None maxdt = 200 stp = 1000100 batch = 0 print(f'Started at {datetime.now()}') for dim in [9]: for eps in eps_space[14:]: eps = round(eps,3) path='/cloud/Public/_data/neuropercolation/4lay/cons=27-knight_steps=1000100/dim=09/batch=0/' try: with open(path+f"eps={round(eps,3):.3f}_phase_diff.txt", 'r', encoding='utf-8') as f: phase_diff = json.load(f) except: with open(path+f"eps={round(eps,3):.3f}_activation.txt", 'r', encoding='utf-8') as f: activation = json.load(f)[100:] osc = list(zip(*activation)) phase_abs = np.array([[np.arctan2(*act[::-1]) for act in osc[i]] for i in range(2)]) phase_diff = diff(phase_abs[0],phase_abs[1]) phase_diff = [round(pha,6) for pha in phase_diff] with open(path+f"eps={round(eps,3):.3f}_phase_diff.txt", 'w', encoding='utf-8') as f: json.dump(list(phase_diff), f, indent=1) all_res = norm(resultant(phase_diff)) av_diff = np.arccos(all_res) try: with open(path+f"eps={round(eps,3):.3f}_ei.txt", 'r', encoding='utf-8') as f: ei = json.load(f) except: with open(path+f"eps={round(eps,3):.3f}_channels.txt", 'r', encoding='utf-8') as f: channels = json.load(f)[100:] ei = [round(np.sum(cha)*(1-H2(eps)),6) for cha in channels] with open(path+f"eps={round(eps,3):.3f}_ei.txt", 'w', encoding='utf-8') as f: json.dump(ei, f, indent=1) extremes = 10000 #[l//2 for l in lens] ext_rat = extremes/(stp-100) circparts = 32 pha_dev = m.pi/circparts pha_max = np.max(np.abs(phase_diff)) phase_in_part = lambda ph, i: abs(ph)<=pha_max/circparts if i==0 else i*pha_max/circparts0 else [] for i in range(circparts)] bot_parts = [dev_parts[i][:ext_parts[i]] if ext_parts[i]>0 else [] for i in range(circparts)] top = [] for part in top_parts: top.extend(part) bot = [] for part in bot_parts: bot.extend(part) print(len(top), len(bot), extremes, 'equal?') sampling = 'samedist_varmaxpha' # pha_center = av_diff # pha_dev = m.pi/8 # from_sync = lambda i: True if abs(phase_diff[i])<0.08*m.pi else False if 0.42*m.pi0 else None # to_sync = lambda i: True if abs(phase_diff[i])<0.08*m.pi else False if 0.42*m.pi=maxdt: path_c = path+f'causal_maxdt={causal_maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' else: path_c = path+f'causal_maxdt={maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' causal_init = states[i].translate(str.maketrans('', '', '.-=')) try: with open(path_c+f"eps={round(eps,3):.3f}_phase_diff.txt", 'r', encoding='utf-8') as f: phasediff = json.load(f) except: sim=Simulate4Layers(dim, eps, coupling=coupling, init=causal_init, noeffect=0, steps=maxdt, draw=None, save='simple', path=path_c, ) with open(path_c+f"eps={round(eps,3):.3f}_activation.txt", 'r', encoding='utf-8') as f: activation = json.load(f) osc = list(zip(*activation)) phase_abs = np.array([[np.arctan2(*act[::-1]) for act in osc[i]] for i in range(2)]) phasediff = diff(phase_abs[0],phase_abs[1]) with open(path_c+f"eps={round(eps,3):.3f}_phase_diff.txt", 'w', encoding='utf-8') as f: json.dump(list(phasediff), f, indent=1) for i in []:#top: original_maxdt=0 for file in os.listdir(path): f = os.path.join(path, file) if not os.path.isfile(f): o_maxdt = file.replace('original_maxdt=','') if c_maxdt != file: original_maxdt = int(o_maxdt) if original_maxdt>=maxdt: path_c = path+f'original_maxdt={original_maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' else: path_c = path+f'original_maxdt={maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' causal_init = states[i].translate(str.maketrans('', '', '.-=')) try: with open(path_c+f"eps={round(eps,3):.3f}_phase_diff.txt", 'r', encoding='utf-8') as f: phasediff = json.load(f) except: sim=Simulate4Layers(dim, eps, coupling=coupling, init=causal_init, noeffect=-1, steps=maxdt, draw=None, save='simple', path=path_c, ) with open(path_c+f"eps={round(eps,3):.3f}_activation.txt", 'r', encoding='utf-8') as f: activation = json.load(f) osc = list(zip(*activation)) phase_abs = np.array([[np.arctan2(*act[::-1]) for act in osc[i]] for i in range(2)]) phasediff = diff(phase_abs[0],phase_abs[1]) phasediff = [round(pha,6) for pha in phasediff] with open(path_c+f"eps={round(eps,3):.3f}_phase_diff.txt", 'w', encoding='utf-8') as f: json.dump(list(phasediff), f, indent=1) bot_res = [] top_res = [] dis_res = [] tot_res = [] bot_ph = [] top_ph = [] dis_ph = [] tot_ph = [] bot_ei = [] top_ei = [] dis_ei = [] tot_ei = [] present_dt=0 for file in os.listdir(path): f = os.path.join(path, file) if not os.path.isfile(f): p_maxdt = file.replace(f'{sampling}_causal_roll{pha_dev:.3f}_maxdt=','') if p_maxdt != file: present_dt = int(p_maxdt) if present_dt>0: try: datapath = path + f"{sampling}_causal_roll{pha_dev:.3f}_maxdt={present_dt}/data/" with open(datapath+f"eps={round(eps,3):.3f}_bot_dia_res.txt", 'r', encoding='utf-8') as f: bot_res = json.load(f) with open(datapath+f"eps={round(eps,3):.3f}_top_dia_res.txt", 'r', encoding='utf-8') as f: top_res = json.load(f) with open(datapath+f"eps={round(eps,3):.3f}_dis_dia_res.txt", 'r', encoding='utf-8') as f: dis_res = json.load(f) with open(datapath+f"eps={round(eps,3):.3f}_bot_dia_ei.txt", 'r', encoding='utf-8') as f: bot_ei = json.load(f) with open(datapath+f"eps={round(eps,3):.3f}_top_dia_ei.txt", 'r', encoding='utf-8') as f: top_ei = json.load(f) with open(datapath+f"eps={round(eps,3):.3f}_dis_dia_ei.txt", 'r', encoding='utf-8') as f: dis_ei = json.load(f) except: present_dt=0 bot_res = [] top_res = [] dis_res = [] for dt in range(present_dt,maxdt): top_pha = [(phase_diff[i+dt]) for i in top] bot_pha = [(phase_diff[i+dt]) for i in bot] dis = [] for i in top: causal_maxdt=0 for file in os.listdir(path): f = os.path.join(path, file) if not os.path.isfile(f): c_maxdt = file.replace('causal_maxdt=','') if c_maxdt != file: causal_maxdt = int(c_maxdt) if causal_maxdt>=maxdt: path_c = path+f'causal_maxdt={causal_maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' else: path_c = path+f'causal_maxdt={maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' with open(path_c+f'eps={round(eps,3):.3f}_phase_diff.txt', 'r', encoding='utf-8') as f: dis.append((json.load(f)[dt])) dei = [] for i in top: causal_maxdt=0 for file in os.listdir(path): f = os.path.join(path, file) if not os.path.isfile(f): c_maxdt = file.replace('causal_maxdt=','') if c_maxdt != file: causal_maxdt = int(c_maxdt) if causal_maxdt>=maxdt: path_c = path+f'causal_maxdt={causal_maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' else: path_c = path+f'causal_maxdt={maxdt}/eps={round(eps,3):.3f}/{i:0{len(str(stp))}}/' with open(path_c+f'eps={round(eps,3):.3f}_channels.txt', 'r', encoding='utf-8') as f: dei.append(np.sum(json.load(f)[dt])*(1-H2(eps))) dis_pha = dis tot_pha = (phase_diff[dt:dt-maxdt]) bot_res.append( [norm(resultant(bot_pha))] ) top_res.append( [norm(resultant(top_pha))] ) dis_res.append( [norm(resultant(dis_pha))] ) tot_res.append( norm(resultant(tot_pha)) ) # bot_ph.append( [phase(*resultant(bot_pha[i])) for i in range(1)] ) # top_ph.append( [phase(*resultant(top_pha[i])) for i in range(1)] ) # dis_ph.append( [phase(*resultant(dis_pha[i])) for i in range(1)] ) # tot_ph.append( phase(*resultant(tot_pha)) ) bot_ei.append( [np.average([ei[i+dt] for i in bot])] ) top_ei.append( [np.average([ei[i+dt] for i in top])] ) dis_ei.append( [np.average(dei)] ) tot_ei.append( np.average(ei[dt:dt-maxdt]) ) if dt%10==9: print(f'Done dt={dt:{len(str(maxdt))}d}') plotpath = path+f'{sampling}_causal_roll{pha_dev:.3f}_maxdt={maxdt}/' new_folder(plotpath+'data/') with open(plotpath+f"data/eps={round(eps,3):.3f}_bot_dia_res.txt", 'w', encoding='utf-8') as f: json.dump(list(bot_res), f, indent=1) with open(plotpath+f"data/eps={round(eps,3):.3f}_top_dia_res.txt", 'w', encoding='utf-8') as f: json.dump(list(top_res), f, indent=1) with open(plotpath+f"data/eps={round(eps,3):.3f}_dis_dia_res.txt", 'w', encoding='utf-8') as f: json.dump(list(dis_res), f, indent=1) with open(plotpath+f"data/eps={round(eps,3):.3f}_bot_dia_ei.txt", 'w', encoding='utf-8') as f: json.dump(list(bot_ei), f, indent=1) with open(plotpath+f"data/eps={round(eps,3):.3f}_top_dia_ei.txt", 'w', encoding='utf-8') as f: json.dump(list(top_ei), f, indent=1) with open(plotpath+f"data/eps={round(eps,3):.3f}_dis_dia_ei.txt", 'w', encoding='utf-8') as f: json.dump(list(dis_ei), f, indent=1) bot_res = list(zip(*bot_res)) top_res = list(zip(*top_res)) dis_res = list(zip(*dis_res)) # bot_ph = list(zip(*bot_ph)) # top_ph = list(zip(*top_ph)) # dis_ph = list(zip(*dis_ph)) bot_ei = list(zip(*bot_ei)) top_ei = list(zip(*top_ei)) dis_ei = list(zip(*dis_ei)) qtplot(f'Diachronic resultant for dim={dim} eps={eps:.3f} with 4 layers', [np.array(range(maxdt))]*4, [tot_res, bot_res[0], dis_res[0], top_res[0]], ['Average Resultant', f'bottom {extremes} ei' f'dis {extremes} ei', f'top {extremes} ei'], x_tag = 'dt', y_tag = 'concentration', export=True, path=plotpath, filename=f'All Diachronic Resultant Norm eps={round(eps,3):.3f} dim={dim} extremes={extremes}.png', close=True) # qtplot(f'Diachronic resultant phase for dim={dim} eps={eps:.3f} with 4 layers', # [np.array(range(maxdt))]*3, # [top_ph[0], dis_ph[0], tot_ph], # ['top {extremes} ei', 'dis {extremes} ei', # 'Average'], # x_tag = 'dt', # y_tag = 'phase', # export=True, # path=plotpath, # filename=f'All Diachronic Resultant Phase eps={round(eps,3):.3f} dim={dim} extremes={extremes} roll{pha_dev:.3f}.png', # close=True) # qtplot(f'Diachronic ei for dim={dim} with 4 layers', # [np.array(range(maxdt))]*4, # [bot_ei, top_ei, dev_ei, tot_ei], # ['EI ev of bottom {extremes} ei', 'EI ev of top {extremes} ei', # 'EI ev of phase filtered ei', 'Average EI'], # x_tag = 'dt', # y_tag = 'average ei', # export=True, # path=path+'plots/', # filename=f'Diachronic EI balanced for eps={round(eps,3):.3f} dim={dim} extremes={extremes} roll{pha_dev:.3f}.png', # close=True) print(f'Done eps={eps:.3f} with dim={dim} at {datetime.now()}') # qtplot(f'Resultant and EI evolution for dim={dim} with 4 layers', # [[0]+eps_space]*2, # [max(av_ei)*diff_res, av_ei], # ['Resultant', 'avEI'], # export=True, # path=path, # filename=f'Resultant and EI for dim={dim}.png', # close=True)