191 lines
7.2 KiB
Python
191 lines
7.2 KiB
Python
|
#!/usr/bin/env python3
|
||
|
|
# -*- coding: utf-8 -*-
|
||
|
|
"""
|
||
|
|
Created on Sat Sep 9 22:23:30 2023
|
||
|
|
|
||
|
|
@author: astral
|
||
|
|
"""
|
||
|
|
|
||
|
|
import os
|
||
|
|
import json
|
||
|
|
import math as m
|
||
|
|
import numpy as np
|
||
|
|
from numpy.linalg import norm
|
||
|
|
from datetime import datetime
|
||
|
|
from random import sample as choose
|
||
|
|
|
||
|
|
from plot import qtplot
|
||
|
|
|
||
|
|
from neuropercolation import Simulate4Layers
|
||
|
|
|
||
|
|
eps_space = list(np.linspace(0.01,0.2,20))
|
||
|
|
|
||
|
|
def resultant(sample):
|
||
|
|
phase_x = [m.cos(ind) for ind in sample]
|
||
|
|
phase_y = [m.sin(ind) for ind in sample]
|
||
|
|
|
||
|
|
return (np.average(phase_x), np.average(phase_y))
|
||
|
|
|
||
|
|
def new_folder(path):
|
||
|
|
if not os.path.exists(path):
|
||
|
|
os.makedirs(path)
|
||
|
|
|
||
|
|
phase = np.vectorize(lambda x,y: (m.atan2(y,x)+m.pi)%(2*m.pi)-m.pi)
|
||
|
|
diff = np.vectorize(lambda x,y: (y-x+m.pi)%(2*m.pi)-m.pi)
|
||
|
|
H2 = lambda x: -x*m.log2(x)-(1-x)*m.log2(1-x)
|
||
|
|
|
||
|
|
extremes = None
|
||
|
|
maxdt = 200
|
||
|
|
|
||
|
|
stp = 1000100
|
||
|
|
batch = 0
|
||
|
|
|
||
|
|
print(f'Started at {datetime.now()}')
|
||
|
|
|
||
|
|
for dim in [9]:
|
||
|
|
for eps in eps_space[4:]:
|
||
|
|
eps = round(eps,3)
|
||
|
|
path='/cloud/Public/_data/neuropercolation/4lay/cons=27-knight_steps=1000100/dim=09/batch=0/'
|
||
|
|
|
||
|
|
try:
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_phase_diff.txt", 'r', encoding='utf-8') as f:
|
||
|
|
phase_diff = json.load(f)
|
||
|
|
except:
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_activation.txt", 'r', encoding='utf-8') as f:
|
||
|
|
activation = json.load(f)[100:]
|
||
|
|
|
||
|
|
osc = list(zip(*activation))
|
||
|
|
phase_abs = np.array([[np.arctan2(*act[::-1]) for act in osc[i]] for i in range(2)])
|
||
|
|
phase_diff = diff(phase_abs[0],phase_abs[1])
|
||
|
|
phase_diff = [round(pha,6) for pha in phase_diff]
|
||
|
|
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_phase_diff.txt", 'w', encoding='utf-8') as f:
|
||
|
|
json.dump(list(phase_diff), f, indent=1)
|
||
|
|
|
||
|
|
|
||
|
|
all_res = norm(resultant(phase_diff))
|
||
|
|
av_diff = np.arccos(all_res)
|
||
|
|
|
||
|
|
try:
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_ei.txt", 'r', encoding='utf-8') as f:
|
||
|
|
ei = json.load(f)
|
||
|
|
except:
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_channels.txt", 'r', encoding='utf-8') as f:
|
||
|
|
channels = json.load(f)[100:]
|
||
|
|
|
||
|
|
ei = [round(np.sum(cha)*(1-H2(eps)),6) for cha in channels]
|
||
|
|
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_ei.txt", 'w', encoding='utf-8') as f:
|
||
|
|
json.dump(ei, f, indent=1)
|
||
|
|
|
||
|
|
extremes = 10000 #[l//2 for l in lens]
|
||
|
|
|
||
|
|
ei_ind = [i for i,val in enumerate(ei[:-maxdt]) if val>0]
|
||
|
|
|
||
|
|
print(f'{len(ei_ind)} states with positive EI')
|
||
|
|
|
||
|
|
samples = choose(ei_ind, extremes)
|
||
|
|
sampling = 'allpos_ei'
|
||
|
|
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_states.txt", 'r', encoding='utf-8') as f:
|
||
|
|
states = json.load(f)[100:]
|
||
|
|
with open(path+f"eps={round(eps,3):.3f}_coupling.txt", 'r', encoding='utf-8') as f:
|
||
|
|
coupling = json.load(f)
|
||
|
|
coupling = [tuple(edge) for edge in coupling]
|
||
|
|
|
||
|
|
phase_pairs = []
|
||
|
|
ei_pairs = []
|
||
|
|
for num,i in enumerate(samples):
|
||
|
|
causal_init = states[i].translate(str.maketrans('', '', '.-='))
|
||
|
|
|
||
|
|
sim = Simulate4Layers( dim,
|
||
|
|
eps,
|
||
|
|
coupling=coupling,
|
||
|
|
init=causal_init,
|
||
|
|
noeffect=0,
|
||
|
|
steps=1,
|
||
|
|
draw=None,
|
||
|
|
)
|
||
|
|
|
||
|
|
activation = sim._activations()
|
||
|
|
channel = sim._channels()
|
||
|
|
|
||
|
|
osc = list(zip(*activation))
|
||
|
|
phase_abs = np.array([[np.arctan2(*act[::-1]) for act in osc[i]] for i in range(2)])
|
||
|
|
phasediff_c = np.round(diff(phase_abs[0],phase_abs[1]),6)
|
||
|
|
ei_c = [round(np.sum(cha)*(1-H2(eps)),6) for cha in channel]
|
||
|
|
max_ei_c = max([np.sum(cha) for cha in channel])
|
||
|
|
|
||
|
|
sim = Simulate4Layers( dim,
|
||
|
|
eps,
|
||
|
|
coupling=coupling,
|
||
|
|
init=causal_init,
|
||
|
|
noeffect=-1,
|
||
|
|
steps=1,
|
||
|
|
draw=None,
|
||
|
|
)
|
||
|
|
|
||
|
|
activation = sim._activations()
|
||
|
|
channel = sim._channels()
|
||
|
|
|
||
|
|
osc = list(zip(*activation))
|
||
|
|
phase_abs = np.array([[np.arctan2(*act[::-1]) for act in osc[i]] for i in range(2)])
|
||
|
|
phasediff_i = np.round(diff(phase_abs[0],phase_abs[1]),6)
|
||
|
|
ei_i = [round(np.sum(cha)*(1-H2(eps)),6) for cha in channel]
|
||
|
|
max_ei_i = max([np.sum(cha) for cha in channel])
|
||
|
|
|
||
|
|
phase_pairs.append((phasediff_i[-1], phasediff_c[-1]))
|
||
|
|
ei_pairs.append((ei_i[-1], ei_c[-1]))
|
||
|
|
|
||
|
|
savepath = path + sampling + '/'
|
||
|
|
new_folder(savepath)
|
||
|
|
|
||
|
|
if num%100==99:
|
||
|
|
print(f'Done {num:0{len(str(extremes))}d}')
|
||
|
|
|
||
|
|
with open(savepath+f"eps={round(eps,3):.3f}_phase_pairs.txt", 'w', encoding='utf-8') as f:
|
||
|
|
json.dump(phase_pairs, f, indent=1)
|
||
|
|
with open(savepath+f"eps={round(eps,3):.3f}_ei_pairs.txt", 'w', encoding='utf-8') as f:
|
||
|
|
json.dump(ei_pairs, f, indent=1)
|
||
|
|
|
||
|
|
phases_i, phases_c = zip(*phase_pairs)
|
||
|
|
ei_i, ei_c = zip(*ei_pairs)
|
||
|
|
|
||
|
|
phase_space = np.linspace(0,m.pi,100+1)
|
||
|
|
ei_space = np.linspace(0,np.max([ei_i,ei_c]),100+1)
|
||
|
|
|
||
|
|
phase_dist_i = [len([ph for ph in phases_i if low<=ph<high])/extremes for low,high in zip(phase_space[:-1],phase_space[1:])]
|
||
|
|
phase_dist_c = [len([ph for ph in phases_c if low<=ph<high])/extremes for low,high in zip(phase_space[:-1],phase_space[1:])]
|
||
|
|
|
||
|
|
max_ei = max(max_ei_i, max_ei_c)
|
||
|
|
|
||
|
|
ei_dist_i = [len([e for e in ei_i if round(e/(1-H2(eps)))==val])/extremes for val in range(max_ei)]
|
||
|
|
ei_dist_c = [len([e for e in ei_c if round(e/(1-H2(eps)))==val])/extremes for val in range(max_ei)]
|
||
|
|
|
||
|
|
qtplot(f'Phase distribution for dim={dim} eps={eps:.3f} with 4 layers',
|
||
|
|
[phase_space[:-1]]*2,
|
||
|
|
[phase_dist_i, phase_dist_c],
|
||
|
|
['Phase dist with ei',
|
||
|
|
'Phase dist without ei'],
|
||
|
|
x_tag = 'phase',
|
||
|
|
y_tag = 'density',
|
||
|
|
export=True,
|
||
|
|
path=savepath,
|
||
|
|
filename=f'Phase dist eps={round(eps,3):.3f} dim={dim} extremes={extremes}.png',
|
||
|
|
close=True)
|
||
|
|
|
||
|
|
qtplot(f'EI distribution for dim={dim} eps={eps:.3f} with 4 layers',
|
||
|
|
[range(max_ei)]*2,
|
||
|
|
[ei_dist_i, ei_dist_c],
|
||
|
|
['EI dist with ei',
|
||
|
|
'EI dist without ei'],
|
||
|
|
x_tag = 'ei',
|
||
|
|
y_tag = 'density',
|
||
|
|
export=True,
|
||
|
|
path=savepath,
|
||
|
|
filename=f'EI dist eps={round(eps,3):.3f} dim={dim} extremes={extremes}.png',
|
||
|
|
close=True)
|
||
|
|
|
||
|
|
print(f'Done eps={eps:.3f} with dim={dim} at {datetime.now()}')
|
||
|
|
|
||
|
|
|