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Add activation dump, background simulation and Simulate1Layer example

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timofej 2023-08-18 19:42:06 +02:00
parent 7d5f579a34
commit 88d4d2c9ea
2 changed files with 93 additions and 49 deletions
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23
examples/Simulate1Layer.py Normal file
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@ -0,0 +1,23 @@
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Fri Aug 18 19:05:04 2023
@author: astral
"""
import numpy as np
from neuropercolation import Simulate1Layer
eps_space = np.linspace(0.005,0.5,100)
for dim in range(4,10):
for eps in eps_space:
eps = round(eps,3)
Simulate1Layer(dim,
eps,
res=2,
path=f'/cloud/Public/_data/neuropercolation/1lay/dim={dim:02}/',
draw=None
).run(evolutions_per_second=0,
last_evolution_step=100000)
print(f'Done eps={eps:.3f} at dim={dim}')

47
neuropercolation/display.py
View File

@ -94,6 +94,7 @@ class Simulate1Layer:
self.__state_to_color = self._get_cell_color if state_to_color_cb is None else state_to_color_cb self.__state_to_color = self._get_cell_color if state_to_color_cb is None else state_to_color_cb
self.__path = path self.__path = path
self.__state_list = [] self.__state_list = []
self.__activation_list = []
def run(self, def run(self,
evolutions_per_second=0, evolutions_per_second=0,
@ -108,10 +109,11 @@ class Simulate1Layer:
""" """
self._append_state() self._append_state()
with contextlib.suppress(KeyboardInterrupt): with contextlib.suppress(KeyboardInterrupt):
while self._is_not_user_terminated() and self._not_at_the_end(last_evolution_step): while self._not_at_the_end(last_evolution_step):
time_ca_start = time.time() time_ca_start = time.time()
self._cellular_automaton.evolve(evolutions_per_draw) self._cellular_automaton.evolve(evolutions_per_draw)
self._append_state() self._append_state()
if self.__draw_engine is not None:
time_ca_end = time.time() time_ca_end = time.time()
self._redraw_dirty_cells() self._redraw_dirty_cells()
time_ds_end = time.time() time_ds_end = time.time()
@ -120,6 +122,7 @@ class Simulate1Layer:
evolution_step=self._cellular_automaton.evolution_step, evolution_step=self._cellular_automaton.evolution_step,
runlendig=len(str(last_evolution_step))) runlendig=len(str(last_evolution_step)))
self._sleep_to_keep_rate(time.time() - time_ca_start, evolutions_per_second) self._sleep_to_keep_rate(time.time() - time_ca_start, evolutions_per_second)
if self.__draw_engine is not None:
try: try:
self.__draw_engine._pygame.quit() self.__draw_engine._pygame.quit()
except: except:
@ -128,13 +131,18 @@ class Simulate1Layer:
def _append_state(self): def _append_state(self):
automaton_state = [[0 for n in range(self.__dimension)] for m in range(self.__dimension)] automaton_state = [[0 for n in range(self.__dimension)] for m in range(self.__dimension)]
activation = 0
for coord, cell in self._cellular_automaton._current_state.items(): for coord, cell in self._cellular_automaton._current_state.items():
x,y = coord x,y = coord
automaton_state[y][x] = int(cell.state[0]) automaton_state[y][x] = int(cell.state[0])
activation += int(cell.state[0])
automaton_state = [''.join(str(cells) for cells in rows) for rows in automaton_state] automaton_state = [''.join(str(cells) for cells in rows) for rows in automaton_state]
automaton_state = '.'.join(str(rows) for rows in automaton_state) automaton_state = '.'.join(str(rows) for rows in automaton_state)
activation = round(1-2*activation/self.__dimension**2, 6)
self.__state_list.append(automaton_state) self.__state_list.append(automaton_state)
self.__activation_list.append(activation)
def _save_state_list(self): def _save_state_list(self):
if not os.path.exists(self.__path): if not os.path.exists(self.__path):
@ -142,6 +150,8 @@ class Simulate1Layer:
with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_states.txt", 'w', encoding='utf-8') as f: with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_states.txt", 'w', encoding='utf-8') as f:
json.dump(self.__state_list, f, indent=1) json.dump(self.__state_list, f, indent=1)
with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_activation.txt", 'w', encoding='utf-8') as f:
json.dump(self.__activation_list, f, indent=1)
def _sleep_to_keep_rate(self, time_taken, evolutions_per_second): # pragma: no cover def _sleep_to_keep_rate(self, time_taken, evolutions_per_second): # pragma: no cover
if evolutions_per_second > 0: if evolutions_per_second > 0:
@ -186,9 +196,6 @@ class Simulate1Layer:
self.__draw_engine.fill_surface_with_color(((0, 0), (self.__rect.width, 30))) self.__draw_engine.fill_surface_with_color(((0, 0), (self.__rect.width, 30)))
self.__draw_engine.write_text((0, 5), f'Step: {evolution_step:>{runlendig}} FPS: {int(1/(evolve_duration+draw_duration))}') self.__draw_engine.write_text((0, 5), f'Step: {evolution_step:>{runlendig}} FPS: {int(1/(evolve_duration+draw_duration))}')
def _is_not_user_terminated(self):
return self.__draw_engine.is_active()
class Simulate2Layers: class Simulate2Layers:
def __init__(self, def __init__(self,
dim, dim,
@ -220,6 +227,7 @@ class Simulate2Layers:
self.__state_to_color = self._get_cell_color if state_to_color_cb is None else state_to_color_cb self.__state_to_color = self._get_cell_color if state_to_color_cb is None else state_to_color_cb
self.__path = path self.__path = path
self.__state_list = [] self.__state_list = []
self.__activation_list = []
def run(self, def run(self,
evolutions_per_second=0, evolutions_per_second=0,
@ -234,10 +242,11 @@ class Simulate2Layers:
""" """
self._append_state() self._append_state()
with contextlib.suppress(KeyboardInterrupt): with contextlib.suppress(KeyboardInterrupt):
while self._is_not_user_terminated() and self._not_at_the_end(last_evolution_step): while self._not_at_the_end(last_evolution_step):
time_ca_start = time.time() time_ca_start = time.time()
self._cellular_automaton.evolve(evolutions_per_draw) self._cellular_automaton.evolve(evolutions_per_draw)
self._append_state() self._append_state()
if self.__draw_engine is not None:
time_ca_end = time.time() time_ca_end = time.time()
self._redraw_dirty_cells() self._redraw_dirty_cells()
time_ds_end = time.time() time_ds_end = time.time()
@ -246,6 +255,7 @@ class Simulate2Layers:
evolution_step=self._cellular_automaton.evolution_step, evolution_step=self._cellular_automaton.evolution_step,
runlendig=len(str(last_evolution_step))) runlendig=len(str(last_evolution_step)))
self._sleep_to_keep_rate(time.time() - time_ca_start, evolutions_per_second) self._sleep_to_keep_rate(time.time() - time_ca_start, evolutions_per_second)
if self.__draw_engine is not None:
try: try:
self.__draw_engine._pygame.quit() self.__draw_engine._pygame.quit()
except: except:
@ -254,14 +264,19 @@ class Simulate2Layers:
def _append_state(self): def _append_state(self):
automaton_state = [[[0 for n in range(self.__dimension)] for m in range(self.__dimension)] for l in range(2)] automaton_state = [[[0 for n in range(self.__dimension)] for m in range(self.__dimension)] for l in range(2)]
activation = [0]*2
for coord, cell in self._cellular_automaton._current_state.items(): for coord, cell in self._cellular_automaton._current_state.items():
x,y,l = coord x,y,l = coord
automaton_state[l][y][x] = int(cell.state[0]) automaton_state[l][y][x] = int(cell.state[0])
activation[l] += int(cell.state[0])
automaton_state = [[''.join(str(bits) for bits in rows) for rows in layers] for layers in automaton_state] automaton_state = [[''.join(str(bits) for bits in rows) for rows in layers] for layers in automaton_state]
automaton_state = ['.'.join(str(rows) for rows in layers) for layers in automaton_state] automaton_state = ['.'.join(str(rows) for rows in layers) for layers in automaton_state]
automaton_state = '-'.join(str(layers) for layers in automaton_state) automaton_state = '-'.join(str(layers) for layers in automaton_state)
activation = [round(1-2*act/self.__dimension**2, 6) for act in activation]
self.__state_list.append(automaton_state) self.__state_list.append(automaton_state)
self.__activation_list.append(activation)
def _save_state_list(self): def _save_state_list(self):
if not os.path.exists(self.__path): if not os.path.exists(self.__path):
@ -269,6 +284,8 @@ class Simulate2Layers:
with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_states.txt", 'w', encoding='utf-8') as f: with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_states.txt", 'w', encoding='utf-8') as f:
json.dump(self.__state_list, f, indent=1) json.dump(self.__state_list, f, indent=1)
with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_activation.txt", 'w', encoding='utf-8') as f:
json.dump(self.__activation_list, f, indent=1)
def _sleep_to_keep_rate(self, time_taken, evolutions_per_second): # pragma: no cover def _sleep_to_keep_rate(self, time_taken, evolutions_per_second): # pragma: no cover
if evolutions_per_second > 0: if evolutions_per_second > 0:
@ -317,9 +334,6 @@ class Simulate2Layers:
self.__draw_engine.fill_surface_with_color(((0, 0), (self.__rect.width, 30))) self.__draw_engine.fill_surface_with_color(((0, 0), (self.__rect.width, 30)))
self.__draw_engine.write_text((0, 5), f'Step: {evolution_step:>{runlendig}} FPS: {int(1/(evolve_duration+draw_duration))}') self.__draw_engine.write_text((0, 5), f'Step: {evolution_step:>{runlendig}} FPS: {int(1/(evolve_duration+draw_duration))}')
def _is_not_user_terminated(self):
return self.__draw_engine.is_active()
class Simulate4Layers: class Simulate4Layers:
def __init__(self, def __init__(self,
dim, dim,
@ -352,6 +366,7 @@ class Simulate4Layers:
self.__state_to_color = self._get_cell_color if state_to_color_cb is None else state_to_color_cb self.__state_to_color = self._get_cell_color if state_to_color_cb is None else state_to_color_cb
self.__path = path self.__path = path
self.__state_list = [] self.__state_list = []
self.__activation_list = []
def run(self, def run(self,
evolutions_per_second=0, evolutions_per_second=0,
@ -366,10 +381,11 @@ class Simulate4Layers:
""" """
with contextlib.suppress(KeyboardInterrupt): with contextlib.suppress(KeyboardInterrupt):
self._append_state() self._append_state()
while self._is_not_user_terminated() and self._not_at_the_end(last_evolution_step): while self._not_at_the_end(last_evolution_step):
time_ca_start = time.time() time_ca_start = time.time()
self._cellular_automaton.evolve(evolutions_per_draw) self._cellular_automaton.evolve(evolutions_per_draw)
self._append_state() self._append_state()
if self.__draw_engine is not None:
time_ca_end = time.time() time_ca_end = time.time()
self._redraw_dirty_cells() self._redraw_dirty_cells()
time_ds_end = time.time() time_ds_end = time.time()
@ -378,6 +394,7 @@ class Simulate4Layers:
evolution_step=self._cellular_automaton.evolution_step, evolution_step=self._cellular_automaton.evolution_step,
runlendig=len(str(last_evolution_step))) runlendig=len(str(last_evolution_step)))
self._sleep_to_keep_rate(time.time() - time_ca_start, evolutions_per_second) self._sleep_to_keep_rate(time.time() - time_ca_start, evolutions_per_second)
if self.__draw_engine is not None:
try: try:
self.__draw_engine._pygame.quit() self.__draw_engine._pygame.quit()
except: except:
@ -386,15 +403,20 @@ class Simulate4Layers:
def _append_state(self): def _append_state(self):
automaton_state = [[[[0 for n in range(self.__dimension)] for m in range(self.__dimension)] for l in range(2)] for k in range(2)] automaton_state = [[[[0 for n in range(self.__dimension)] for m in range(self.__dimension)] for l in range(2)] for k in range(2)]
activation = [[0,0],[0,0]]
for coord, cell in self._cellular_automaton._current_state.items(): for coord, cell in self._cellular_automaton._current_state.items():
x,y,l,o = coord x,y,l,o = coord
automaton_state[o][l][y][x] = int(cell.state[0]) automaton_state[o][l][y][x] = int(cell.state[0])
activation[o][l] += int(cell.state[0])
automaton_state = [[[''.join(str(bits) for bits in rows) for rows in layers] for layers in oscillators] for oscillators in automaton_state] automaton_state = [[[''.join(str(bits) for bits in rows) for rows in layers] for layers in oscillators] for oscillators in automaton_state]
automaton_state = [['.'.join(str(rows) for rows in layers) for layers in oscillators] for oscillators in automaton_state] automaton_state = [['.'.join(str(rows) for rows in layers) for layers in oscillators] for oscillators in automaton_state]
automaton_state = ['-'.join(str(layers) for layers in oscillators) for oscillators in automaton_state] automaton_state = ['-'.join(str(layers) for layers in oscillators) for oscillators in automaton_state]
automaton_state = '='.join(str(oscillators) for oscillators in automaton_state) automaton_state = '='.join(str(oscillators) for oscillators in automaton_state)
activation = [[round(1-2*act/self.__dimension**2, 6) for act in layer] for layer in activation]
self.__state_list.append(automaton_state) self.__state_list.append(automaton_state)
self.__activation_list.append(activation)
def _save_state_list(self): def _save_state_list(self):
if not os.path.exists(self.__path): if not os.path.exists(self.__path):
@ -402,6 +424,8 @@ class Simulate4Layers:
with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_states.txt", 'w', encoding='utf-8') as f: with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_states.txt", 'w', encoding='utf-8') as f:
json.dump(self.__state_list, f, indent=1) json.dump(self.__state_list, f, indent=1)
with open(self.__path+f"eps={round(self.__epsilon,3):.3f}_activation.txt", 'w', encoding='utf-8') as f:
json.dump(self.__activation_list, f, indent=1)
def _sleep_to_keep_rate(self, time_taken, evolutions_per_second): # pragma: no cover def _sleep_to_keep_rate(self, time_taken, evolutions_per_second): # pragma: no cover
if evolutions_per_second > 0: if evolutions_per_second > 0:
@ -450,6 +474,3 @@ class Simulate4Layers:
def print_process_info(self, evolve_duration, draw_duration, evolution_step, runlendig): def print_process_info(self, evolve_duration, draw_duration, evolution_step, runlendig):
self.__draw_engine.fill_surface_with_color(((0, 0), (self.__rect.width, 30))) self.__draw_engine.fill_surface_with_color(((0, 0), (self.__rect.width, 30)))
self.__draw_engine.write_text((0, 5), f'Step: {evolution_step:>{runlendig}} FPS: {int(1/(evolve_duration+draw_duration))}') self.__draw_engine.write_text((0, 5), f'Step: {evolution_step:>{runlendig}} FPS: {int(1/(evolve_duration+draw_duration))}')
def _is_not_user_terminated(self):
return self.__draw_engine.is_active()